Multiple Alignment (multiple)

Functions

mult_align(seqs[, gop, scale, tree_calc, …])

A short-cut method for multiple alignment analyses.

SCA(infile, **keywords)

Method returns alignment objects depending on input file or input data.

Classes

Multiple(seqs, **keywords)

Basic class for multiple sequence alignment analyses.

MSA(infile, **keywords)

Basic class for carrying out multiple sequence alignment analyses.

Alignments(infile[, row, col, conf, …])

Class handles Wordlists for the purpose of alignment analyses.