Multiple Alignment (multiple)

Functions

mult_align(seqs[, gop, scale, tree_calc, …])	A short-cut method for multiple alignment analyses.
SCA(infile, **keywords)	Method returns alignment objects depending on input file or input data.

Classes

Multiple(seqs, **keywords)	Basic class for multiple sequence alignment analyses.
MSA(infile, **keywords)	Basic class for carrying out multiple sequence alignment analyses.
Alignments(infile[, row, col, conf, …])	Class handles Wordlists for the purpose of alignment analyses.