lingpy.tests.align package

Submodules

lingpy.tests.align.test_multiple module

Testing multiple module.

class lingpy.tests.align.test_multiple.Tests(methodName='runTest')

Bases: unittest.case.TestCase

setUp()
test___get__()
test_get_local_peaks()
test_get_pairwise_alignments()
test_get_peaks()
test_get_pid()
test_iterate_all_sequences()
test_iterate_clusters()
test_iterate_orphans()
test_iterate_similar_gap_sites()
test_lib_align()
test_mult_align()
test_prog_align()
test_sum_of_pairs()
test_swap_check()

lingpy.tests.align.test_pairwise module

class lingpy.tests.align.test_pairwise.TestPairwise(methodName='runTest')

Bases: unittest.case.TestCase

setUp()
test_align()
test_basics()
lingpy.tests.align.test_pairwise.test_editdist()
lingpy.tests.align.test_pairwise.test_nw_align()
lingpy.tests.align.test_pairwise.test_pw_align()
lingpy.tests.align.test_pairwise.test_structalign()
lingpy.tests.align.test_pairwise.test_sw_align()
lingpy.tests.align.test_pairwise.test_turchin()
lingpy.tests.align.test_pairwise.test_we_align()

lingpy.tests.align.test_sca module

Test the SCA module.

class lingpy.tests.align.test_sca.TestAlignments(methodName='runTest')

Bases: lingpy.tests.util.WithTempDir

setUp()
test_align()
test_get_confidence()
test_get_consensus()
test_ipa2tokens()
test_output()
class lingpy.tests.align.test_sca.TestMSA(methodName='runTest')

Bases: lingpy.tests.util.WithTempDir

test_output()
class lingpy.tests.align.test_sca.TestPSA(methodName='runTest')

Bases: lingpy.tests.util.WithTempDir

test_output()
lingpy.tests.align.test_sca.test_get_consensus()

Module contents